A 2013 workshop Future proofing New Zealand’s shellfish aquaculture: Monitoring and adaptation to ocean acidification, brought together experts from government, the aquaculture industry and science organizations from the US and NZ to raise awareness of ocean acidification within the NZ aquaculture community, identify ways to protect the aquaculture industry and develop US-NZ scientific cooperation to address OA. Papers presented at the workshop and points raised during discussion are summarised.

Increasingly frequent and intense extreme weather events such as Cyclone Gabrielle are likely to impact seafloor marine ecosystems by accelerating soil erosion and sediment transport to the ocean by rivers.

The objective of this project was to understand sediment impacts from the February 2023 Cyclone Gabrielle event on marine environments of the Hawke’s Bay and Gisborne regions to enable rapid fisheries management decisions.

We conducted two vessel surveys in June and October 2023 focusing on offshore seabed environments deeper than 15 metres. As part of these surveys we mapped selected areas of the seafloor, surveyed life on the seabed using a towed underwater camera, and obtained sediment core samples.

An ocean current and sediment transport model was designed and implemented to investigate the transport and deposition of sediments after Cyclone Gabrielle. Concentrations of suspended sediments and other parameters in the surface ocean along the east coast of the North Island were estimated from satellite images. This satellite information was used to inform the sediment transport model and to characterise the spatial extent and longevity of the offshore sediment plumes generated by Cyclone Gabrielle. A Seafloor model was used to explore impacts and recovery of seafloor ecosystems following the cyclone.

The analysis of satellite images suggest that the influence of Cyclone Gabrielle lasted approximately two to three months across the Hawke’s Bay and Gisborne coastal marine areas, with surface ocean parameters largely returning to normal by May. The concentrations of suspended sediment at the ocean surface in February were significantly elevated, but they did not exceed values typical of winter months.
Seabed mapping revealed areas of significant sediment erosion, and deposition up to about one metre in thickness, at Pania Reef, Tangoio Reef and Clive outfall area in Hawke Bay. Elsewhere, sediment core observations suggested the presence of fresh muddy deposits of up to about 15 centimetres. Swell waves were resuspending muddy sediments at shallow locations for several months after the cyclone, as was evident by the low underwater visibility during camera deployments.

The abundance and diversity of the sediment fauna sampled in Hawke’s Bay and Gisborne before (2010) and after Cyclone Gabrielle (June and October 2023) tended to increase away from the shore and into deeper waters. Sediment fauna were less abundant in June 2023 when compared with 2010, but appeared to be recovering by October 2023.

Seafloor animal and plant communities are highly likely to have been impacted by sediments at 11 of the 36 locations we surveyed using the towed underwater camera, as assessed by observations including (1) fresh mud layer on the seafloor, (2) animal/plant life in poor condition, and/or (3) absence of seaweed at shallow depths. However, for most of these locations a direct link to Cyclone Gabrielle cannot be demonstrated because no information on the distribution of seafloor organisms is available from before the cyclone. The likely exception is Wairoa Hard in Hawke Bay, where available information shows that kelp and sponges were present before the cyclone but were almost completely or completely absent after the cyclone. Whether this loss of habitat has led to reductions in associated fish populations is unclear.

Although limited by the availability of data, the ocean current and sediment transport model produced realistic predictions of suspended sediment concentrations and deposition at the seafloor. In the days following the cyclone, sedimentation in Hawke Bay was predicted to occur mainly close to shore in the western and central parts of the bay. In the Gisborne region, there was deposition of up to about 10 centimetres of sediments offshore of Poverty Bay and along a narrow band of the coast to the north near Tokomaru and Tolaga bays. These model predictions are broadly consistent with observations from the sediment core samples.

The Seafloor model showed small declines in structure-forming organisms such as sponges for Hawke’s Bay following Cyclone Gabrielle. These declines were not substantial, most likely because the region is already impacted by decades of fishing and increased sedimentation. The Seafloor model predicted weaker cyclone impacts for Gisborne than Hawke’s Bay and indicated that continued trawling may slow down recovery of seafloor communities following extreme weather events.

The lack of pre-cyclone information was a major obstacle in assessing the potential impacts of the cyclone on seabed ecosystems. Information collected as part of this project now form a valuable baseline that will inform future impact assessments in the region. Another limitation is the inability to use towed cameras to survey inshore habitats for extended periods because of poor underwater visibility. A precautionary approach could be warranted in the period following an extreme weather event until key habitats and ecosystems can be surveyed, and fish stocks and catch levels should be carefully monitored in the years following the event.

Sediment transport modelling is a promising tool for rapidly identifying areas most at risk from sedimentation following extreme weather events. However targeted sampling of sediment and water parameters under normal and flood conditions would help improve the accuracy and reliability of model predictions. The Seafloor model could be used to explore how spatial changes in fishing effort could enhance recovery following extreme weather events and could be improved through better information on the distribution of seafloor sediment and reefs and their associated animal and plant communities, particularly in the Gisborne region.

The impact of extreme weather events is made worse by decades of increased sedimentation in New Zealand’s marine environments. Addressing the long-term issue of sedimentation in marine ecosystems and the impacts of extreme weather events will require addressing the factors that have made New Zealand’s catchments more prone to erosion.

This report presents an assessment of the orange roughy stock off the west coast of the South Island (ORH 7B) in 2020. There was a fishery from 1985 to 1992, with the TACC peaking at 1708 t between 1989 and 1995, and the fishery was closed from October 2007. The assessment used two acoustic biomass estimates (2017, 2019) and a 2019 age frequency, completely rejecting the assumptions used in previous assessments that CPUE was directly proportional to biomass and that recruitment followed the assumed recruitment curve. This assessment is considered preliminary as work was stopped due to the conclusion that the acoustic surveys had probably missed a substantial proportion of the spawning biomass.

This report provides a 2020 update of 2014 and 2017 assessments of the East and South Chatham Rise orange roughy stock, to enable an HCR-derived recommended catch limit for 2020–21. Three age-structured Bayesian population models were fitted to biomass and composition data. Virgin biomass (B0) was estimated as 300 000–350 000 t and 2020 stock status from the base case model was 36% B0 (± 95% CIs of 30 to 41%). With a vulnerable biomass of 157 000 t, the HCR-derived recommended catch limit was 6348 t for 2020–21, with a slowing increasing population over future years.

This report summarises commercial catch and effort statistics for rock lobsters, which are also known in New Zealand as “crayfish” or “kōura”.

The summaries presented in this document cover the rock lobster legal fishing years (1 April–31 March) for April 1979 to March 2023.

There are nine Quota Management Areas (QMAs) that cover all inshore waters of the North Island, the South Island, and the Chatham Islands. There are 43 smaller statistical areas that lie within these nine QMAs. The summaries are ordered by QMA, with each QMA identified by a three-letter code and a number. The rock lobster code is CRA, so the nine QMAs are labelled CRA 1 to CRA 9.

The first three tables for each CRA QMA summarise, by statistical area and fishing year, (1) number of vessels, (2) catch, and (3) effort. The last category is defined as the total number of rock lobster pots lifted within each fishing year and statistical area. The fourth table summarises catch by month and fishing year for the entire QMA, and a fifth table gives the monthly catch by statistical area for just the final fishing year, which is 2022–23 in this document.

The sixth table for each QMA summarises catch-per-unit-effort (CPUE) by statistical area and fishing year. CPUE in this table is defined as the catch (in kilograms) from the second table divided by the number of potlifts in the third table. There is a seventh table providing CPUE that has gone through a mathematical procedure called “standardisation” which attempts to factor out aspects of the CPUE which might change over time. The standardisation procedure has been suspended beginning with 2019–20 because there are comparability issues associated with the changeover from paper forms to electronic reporting.

Within the dairy sector, several databases exist that have recorded farms, animals, and milk production over time, as well as feed use both through time and seasonally. This report assesses the feasibility of combining these databases to provide monthly estimates of feeds (grown on farm and imported) eaten by dairy cows from 1990 to 2020 for different types of farm systems and regions of New Zealand.

This study estimated the post-release survival of inshore finfish with current commercial minimum legal sizes—blue cod, blue moki, butterfish, kingfish, red moki, red cod, sand flounder, snapper, tarakihi, trevally, and yellowbelly flounder—and those currently allowed to be returned under disposal code X— kingfish, rig, sand flounder, school shark, rough skate, smooth skate, and spiny dogfish.

A questionnaire was developed and circulated to fishers, fishery observers, and scientists with knowledge of each species to obtain their estimates of at-release survival (i.e., the probability the fish/shark was alive when put back into water) and post-release survival (the probability an individual was both alive at release and survived following release). Estimates were obtained for each gear type as well as fishing categories within each gear type, e.g., duration, depth, and bag size. For some species, estimates of post- release survival were informed by literature on the survival of same or similar species.

These data were used with fishery characterisations to model the survival for each species. For species with a minimum legal size, both at-release and post-release survival estimates were used, whereas for those species released under disposal code X, which may only be released if alive and likely to survive, only the post-release survival estimates were used.

The post-release survival from longlines for snapper, kingfish, and rough skate (assuming they are released alive) was “medium-high”, i.e., the lower bootstrapped 90% confidence range was lower than 0.50, but greater than 0.25, and upper 90% confidence range exceeded 0.75. The same survival range was estimated for snapper caught in pots. For snapper, this result was based on expert knowledge and incorporated literature-based mean values based on empirical studies for this species in New Zealand.

However, for rough skate, the result was based on the informed opinion of 2 science experts only (at-vessel survival was assumed to be 100%) and without the benefit of literature-based empirical estimates as none exist for this species. If at-release survival estimates are included for kingfish, the range decreases to “medium”. For blue cod, and other sharks, skates, and rays, survival from capture on bottom longline was “medium-low”. Red cod survival was “low”, and an “uncertain” outcome was applied to smooth skate and blue moki due to the lack of available knowledge. For species such as spiny dogfish and school shark, the lower range of perceived survival was at least partially a result of the wide range of depths where these species are discarded, which includes deepwater fisheries with larger vessels and potentially different handling practices.

Post-release survival of most species from trawl gear was perceived to be “medium-low” at best, with 90% confidence range either spanning 0.25 up to but less than 0.75, or else between 0.25 and 0.5. Blue cod, red cod, flatfish, and tarakihi were considered in the “low” range, where the 90% confidence range did not exceed 0.25. Survival of both rough and smooth skates in trawl gear was “uncertain”, based on the lack of empirical data for these species and the wide range of estimates for related species in overseas fisheries. Where bottom trawl with a Modular Harvest System cod-end was considered as a separate gear, the lack of available data on this gear type meant survival was considered “uncertain”. For set net, the perceived survival of all species where this gear was considered an important method, was “medium-low”.

The species-method survival confidence ranges presented in this report are based on the best currently available expert knowledge and thorough reviews of the current survival literature; as such, these ranges are unlikely to be improved upon without further investment in release survival research.

Jack mackerels (JMA) support significant commercial fisheries in New Zealand, with over 75% of the total jack mackerel catch taken by trawl fisheries off the west coasts of the North Island and South Island, in JMA 7. Three jack mackerel species are found in New Zealand waters, namely Trachurus declivis, T. murphyi, and T. novaezelandiae.

New Zealand commercial catches of jack mackerels have been recorded under the general code JMA. Therefore species-specific catch information is not available from the fishery data. Estimates of proportions of the three Trachurus species in the catch, based on observer data which includes separate codes for each species, are essential for assessment of the individual stocks.

This report updates the data collected by the New Zealand observer sampling programme from trawl landings of jack mackerels in JMA 7 with the data collected during the 2021–22 fishing year, including estimates of species proportions and sex ratios in the landings, catch-at-length (fork length, cm), and catch-at-age for these species.

Estimated proportions of catch by species based on observer data have historically shown that T. declivis comprises 61–73% of the catch for all statistical areas, followed by T. novaezelandiae at 21–33%, and T. murphyi at 2–8%. In 2021–22, proportions of T. declivis, T. novaezelandiae, and T. murphyi were 77%, 23%, and less than 1%, respectively.

Sampled sex ratios of T. declivis and T. novaezelandiae were close to a sex ratio of 1:1 in the 2021–22 fishing year, and sex ratios for T. murphyi were biased towards females (56%) in 2021–22.

Trachurus declivis and T. novaezelandiae fish in the observer data indicated decreasing proportions of larger and older fish in the commercial catch in recent years, whereas the length and age data for T. murphyi indicated the catch mainly comprised large, older fish, with little evidence of younger fish coming through.

This project estimated survival of six pelagic species (southern bluefin tuna, Pacific bluefin tuna, swordfish, blue shark, mako shark, and porbeagle shark) following release from commercial fishing gear to inform a government review of their landing exceptions.

Fishery characterisations revealed that the main fishing gears responsible for discarded fish were surface longline (all species) and trawl (swordfish, mako, and porbeagle).

Literature reviews were conducted to document current knowledge on the status of an individual when brought to the vessel and ‘post-release’ survival (i.e., survival in the weeks to months following release) from these methods, as well as the factors that affect survival of each species. The key results were:

Bluefin tunas (including southern bluefin tuna and Pacific bluefin tuna) and swordfish typically have high post-release survival following capture by surface longline, with most studies reporting survival rates of 88% or greater for bluefin tunas and 50–88% for swordfish.
Blue shark have high at-vessel and post-release survival following capture by surface longline, with most studies reporting at-vessel and post-release survival rates of > 80%.

Mako have moderate to high at-vessel and post-release survival following capture by surface longline, with most studies reporting at-vessel and post-release survival rates ranging from about 50–87% and 56–94%, respectively.
Porbeagle have moderate to high at-vessel survival and variable post-release survival following capture by surface longline, with estimates of 56–79% and 25–90% for at-vessel and post-release survival, respectively.
There have been no comparable studies documenting at-vessel or post-release survival of swordfish, mako, or porbeagle from trawl.

A questionnaire was developed and circulated to fishers, fishery observers, and scientists with knowledge of each species to obtain their estimates of at-release survival (i.e., the probability the fish/shark was alive when put back into water), post-release survival, and combined survival (the probability an individual was both alive at release and survived following release) of the three shark species, and post-release survival of the thee fish species (in accordance with their current landing exceptions).

Questionnaire responses were used to derive survival probability range estimates for each species, with separate analyses conducted that included and excluded information from the literature.

For individuals released after capture by surface longline, the results of this analysis indicated post-release survival for southern bluefin tuna, Pacific bluefin tuna, and swordfish is likely to be high; blue shark are likely to have high at-release and post-release survival, and a medium-high combined survival; mako are likely to have medium at-release and medium-high post-release survival (reduced to medium if excluding information from the literature in the analysis), and low-medium combined survival; and porbeagle are likely to have low at-release survival, low-medium post-release survival, and low combined survival.

Post-release survival of swordfish released from trawl gear was likely to be low, and mako and porbeagle caught by trawl were likely to have low at-release, post-release, and combined survival.

These results, however, resulted from a small number of survey responses (only one respondent for trawl gear) and often without any comparable supporting published studies.

Survival estimates presented here should thus be interpreted with caution.

The Greenshell mussel (GSM) is a commercially, ecologically and culturally significant species to New Zealand. Summer die-offs, spat retention issues and a severe decline in GSM spat settlement have been reported in the Marlborough Sounds. The causes of these effects are unknown but preliminary evidence indicates that pressure from anthropogenic activities could contribute. The aims of this study were to

(1) test the toxicity of water and sediment extracts on early life stages of the GSM to identify potential sources of stressors affecting GSM recruitment, and

(2) investigate the effects of temperature on the toxicity of these stressors to help understand the potential impact of climate change and pollution on GSM.

New Zealand’s Hector’s dolphins are an endangered species. A key threat to their survival is entanglement in fishing gear, including trawl nets. In this study, we report on a field trial where underwater microphones (hydrophones) were fitted to trawling equipment and the echolocation clicks naturally produced by Hector’s dolphins were localised to determine how the dolphins interacted with the trawling equipment as it moved through the water. The hydrophones were protected within custom-built cages to withstand the physical stress associated with being attached to fishing equipment that is dragged along the seabed. The field trial was conducted off the coast of Timaru, New Zealand, in September and October 2022. While the hydrophones recorded dolphin sound underwater, a Fisheries New Zealand observer on the boat also looked out for dolphins.

The protective cages around the hydrophones proved effective and we were able to successfully localise dolphins. Dolphins were localised moving towards the mouth of the fishing net from various approach angles, and, on several occasions, we were able to successfully distinguish multiple dolphins each moving along different paths. Even though we only analysed a subset of the acoustic data from each trawl, dolphin clicks were detected acoustically during trawls on more occasions than the observer on the fishing boat was able to see dolphins. Unfortunately silt from the seabed entered some of the connections between the hydrophones and the acoustic recorder, which resulted in corrupted data on some days, but overall the field trial was successful.

This study showed that listening for the presence of dolphins can be more effective than looking for dolphins from a boat. We suggest that a combination of listening and looking for dolphins would be the most effective way to detect dolphins that might be near the fishing net. In the long term, the listening system described here could be developed into a real-time warning system that alerts the fishing vessel master when dolphins are close to the fishing net. If the vessel master is aware of the dolphins, they could avoid activities that result in high-risk of entanglement, such as sharp turns or drawing in the net at the end of the trawl. Dolphin detection could also help with targeted use of devices that encourage the dolphins to move away from the high-risk areas—such devices emit noise and should be used as little as possible to minimise noise pollution and disturbance to the dolphins.

Changes in blue cod populations off Canterbury and in the Marlborough Sounds has raised concerns about the impact of human stressors on these populations, but the relationship between most stressors and blue cod is unknown.

Information on blue cod abundance was matched with environmental data to understand the habitat characteristics important for blue cod adults and juveniles off three Canterbury sites; Banks Peninsula, Motunau, Kaikōura.

Changes in potential stressors to blue cod habitat were compared with blue cod population status over 20 years at the sites off Canterbury and in the Marlborough Sounds.

Blue cod were associated with areas where the seafloor is rough and complex (e.g., reef systems), where structural habitat was provided by plants and animals, and in areas with higher water clarity and lower temperature.

Blue cod population status was related to stressors from land use (e.g., coastal water quality), and increasing water temperatures in most locations, although the intensity of these stressors has varied substantially over time and among locations.

This information provides guidance on the scale and focus for future research and potential management opportunities to limit these stressors and ensure sustainability of the blue cod fishery.

This report presents the results of a field survey made in December 2022 to estimate the abundance of kina in Tory Channel, Marlborough Sounds (SUR 7A). Kina densities were determined along with roe biomass from dive and camera transects, with estimates of abundance utilising high resolution bathymetry data. Total biomass of kina in the survey area was estimated to be 595 t, with a CV of 19%; the biomass of kina roe was estimated to be 62.9 t, most of which was in the highest quality category.

The Spatially Explicit Fisheries Risk Assessment framework has recently been updated and applied to assess the fisheries risk to seabird populations within the New Zealand EEZ. In the current report, the approach is applied to seabirds globally in the southern hemisphere. Catchabilities were estimated from New Zealand captures. Then global fishing effort and species distributions were collated and used to assess the risk to seabirds from predicted fisheries captures throughout their range.